PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC12162_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 151aa    MW: 17195.5 Da    PI: 9.1187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC12162_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.5e-112977355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  RrC12162_p1 29 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 77
                 58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.64E-182493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.45E-102481No hitNo description
PROSITE profilePS5088815.4852676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-172794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-82977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-103282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MNKESSQSEE TPPKENYIHM RARRGQATNS HSLAERVRRE KISERMRLLQ ELVPGCNKIT  60
GKAVMLDEII NYVQSLQQQV EFLSMKLATV NPELNVDIDR ILAKDLLQPR DRNTPTLGLN  120
PFTGFQGTMP NISTTTTPQY NSLPQANNTR E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2218061e-140AK221806.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, complete cds, clone: RAFL21-86-B04.
GenBankAK2293091e-140AK229309.1 Arabidopsis thaliana mRNA for bHLH transcription factor like protein, partial cds, clone: RAFL16-57-I01.
GenBankBT0126551e-140BT012655.1 Arabidopsis thaliana At1g10120 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305146.13e-94hypothetical protein CARUB_v10009514mg
SwissprotQ6NKN93e-93BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A078JFB97e-95A0A078JFB9_BRANA; BnaC05g07820D protein
STRINGscaffold_101064.13e-92(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51962849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-94bHLH family protein